Package: labNorm 1.0.1
labNorm: Normalize Laboratory Measurements by Age and Sex
Provides functions for normalizing standard laboratory measurements (e.g. hemoglobin, cholesterol levels) according to age and sex, based on the algorithms described in "Personalized lab test models to quantify disease potentials in healthy individuals" (Netta Mendelson Cohen, Omer Schwartzman, Ram Jaschek, Aviezer Lifshitz, Michael Hoichman, Ran Balicer, Liran I. Shlush, Gabi Barbash & Amos Tanay, <doi:10.1038/s41591-021-01468-6>). Allows users to easily obtain normalized values for standard lab results, and to visualize their distributions. See more at <https://tanaylab.weizmann.ac.il/labs/>.
Authors:
labNorm_1.0.1.tar.gz
labNorm_1.0.1.zip(r-4.5)labNorm_1.0.1.zip(r-4.4)labNorm_1.0.1.zip(r-4.3)
labNorm_1.0.1.tgz(r-4.4-any)labNorm_1.0.1.tgz(r-4.3-any)
labNorm_1.0.1.tar.gz(r-4.5-noble)labNorm_1.0.1.tar.gz(r-4.4-noble)
labNorm_1.0.1.tgz(r-4.4-emscripten)labNorm_1.0.1.tgz(r-4.3-emscripten)
labNorm.pdf |labNorm.html✨
labNorm/json (API)
NEWS
| # Install 'labNorm' in R: |
| install.packages('labNorm', repos = c('https://aviezerl.r-universe.dev', 'https://cloud.r-project.org')) |
- LAB_DETAILS - Available lab names
- creatinine_data - Example values of Hemoglobin and Creatinine
- hemoglobin_data - Example values of Hemoglobin and Creatinine
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:5fd2bcd9ac. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 12 2024 |
| R-4.5-win | NOTE | Nov 12 2024 |
| R-4.5-linux | NOTE | Nov 12 2024 |
| R-4.4-win | NOTE | Nov 12 2024 |
| R-4.4-mac | NOTE | Nov 12 2024 |
| R-4.3-win | OK | Nov 12 2024 |
| R-4.3-mac | OK | Nov 12 2024 |
Exports:ln_convert_unitsln_data_downloadedln_download_dataln_lab_default_unitsln_lab_unitsln_normalizeln_normalize_multiln_patients_quantile_valueln_plot_distln_quantile_value
Dependencies:clicolorspacedplyrfansifarverforcatsgenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6rappdirsRColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithryesno
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example values of Hemoglobin and Creatinine | creatinine_data hemoglobin_data |
| Available lab names | LAB_DETAILS |
| Convert values to the default units for the lab | ln_convert_units |
| Download high-resolution reference distributions | ln_data_downloaded ln_download_data |
| Get available units for a lab | ln_lab_default_units ln_lab_units |
| Normalize lab values to age and sex | ln_normalize ln_normalize_multi |
| Plot age-sex distribution of a lab | ln_plot_dist |
| Compute the lab value for a given quantile | ln_patients_quantile_value ln_quantile_value |
